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双语推荐:A基因

文章根据已知植物eEF-1a(编码Eukaryotic elongation factor1-alpha)基因的保守序列设计引物,采用RT-PCR的方法扩增独行菜(Lepidium apetalumWilld.)eEF-1a基因片段。结果获得一大小为570bp的基因片段,序列比对表明,该基因片段与拟南芥eEF-1a基因核苷酸序列的同源性达到95%,推测该其应该是独行菜eEF-1a基因片段。采用RT-PCR方法,对独行菜三个生长阶段材料及对应阶段冷诱导后地材料中的eEF-1a基因表达作了分析,表明eEF-1a在独行菜组织中表达稳定,可以作为实时荧光定量PCR研究独行菜基因表达分析中的看家基因
Degenerate primers were designed based on the conserved sequences of the eEF-1a genes from oth-er plants. And the eEF-1a gene fragment was obtained by RT- PCR from Lepidium (Lepidium apetalum Willd.). The eEF-1a gene fragment contained 570 bp nucleotide acids. Blasting analysis showed that it has 95% nucleotide sequence homology with one in arabidopsis thaliana. And RT-PCR analysis showed that the expression of eEF-1a gene was steady in Lepidium, and it can be used as internal standard when study on other genes’ expression and regulation in Lepidium.

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目的:对非综合征性先天性重度及以上感音神经性听力损失儿童及其父母进行耳聋相关基因检测,探讨耳聋基因芯片筛查在临床中应用的有效性和可行性。方法选择来自医院听力检测中心的47个听障儿童家庭,包括52例非综合征性先天性感音神经性听力损失患儿及其父母,应用遗传学耳聋基因芯片对47个家庭进行GJB2、GJB3、SLC26A4、线粒体12S rRNA4个常见耳聋基因9个检测位点的基因检测。结果146例受检者中,17个家庭的43例筛查结果阳性,其中16例听力损失患儿筛查阳性,筛查阳性率为30.8%。GJB2基因235delC位点纯合突变8例,GJB2基因235delC位点杂合突变20例,GJB2基因235delC位点和SLC26A4基因IVS7-2A〉G位点杂合突变1例,SLC26A4基因IVS7-2A〉G位点纯合突变2例,SLC26A4基因IVS7-2A〉G位点杂合突变10例,SLC26A4基因2168A〉G位点杂合突变2例。结论应用耳聋基因芯片检测技术能快速、高效地检测非综合征性耳聋患者的遗传性致病基因,适用于大规模群体耳聋基因的筛查,有助于临床医生从病因学角度辅助耳聋诊断,引入正确的康复干预措施,并为具有聋病易感基因的听力损失儿童家庭提供针对性的遗传咨询指导。
Objective To screen the deafness-related genes in children with severe and profound non-syndromic sensorineural hearing loss(NSHL) and their parents using DNA microarray and to investigate the reliability and feasibility of this technique. Methods 52 children with NSHL and their parents were screened with the DNA microarray which can detect 9 hot-spot mutations of four common deafness-related genes, including GJB2(35delG, 176del16, 235delC, 299_300delAT), GJB3(538C>T),SLC26A4(2168A>G, IVS7-2A>G) and mitochondrial 12S rRNA(1494C>T, 1555A>G). Results 43 of 146 subjects had positive results.16 of 52 NSHL children carried at least one deafness-related gene mutation and the positive rate was 30.8%. The GJB2 235delC homozygous mutations was found in 8 cases, GJB2 235delC heterozygous mutations in 20 cases,GJB2 235delC mutation/SLC26A4 IVS7-2A>G heterozygous mutation in 1 case, SLC26A4 IVS7-2A>G homozygous mutations in 2 cases, SLC26A4 IVS7-2A>G heterozygous mutations in 10 cases and SLC26A4

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目的利用食管鳞状细胞癌细胞相关基因芯片数据,筛选与食管癌显著相关的关键基因,并对关键基因所在的模块进行功能研究。方法从基因表达数据库 GEO 数据库中下载数据 GSE17351(数据共10个样本,正常和食管鳞状细胞癌样本组织各5个),利用 R软件包做数据预处理和差异表达分析,选取差异表达基因(FDR 2或 0.9),统计网络中各个节点的度,挑选出最关键的主效基因(hub基因)。然后利用Cytoscape软件插件 Mcode对整个网络进行网络模块化,并通过插件Bingo(P value<0.05)对hub基因所在的模块进行功能注释,推测模块中影响基因特异性表达导致食管癌的机制和方式。结果通过比较正常和患病者食管鳞状细胞癌表达数据,筛选到600个差异表达的基因,构建了包含268对差异表达基因产物蛋白对的相互作用网络。找到最关键 hub 基因 TOP2A。得到1个包括hub基因在内由5个差异表达基因组成的模块,模块功能最显著富集在染色体分离和浓缩;发现与多种癌症相关的基因TOP2A共同起染色体活动基因 NCAPG。结论食管鳞癌的发生与最关键基因 TOP2A的异常表达有关,推测与之功能发生作用的基因 NCAPG 基因通过与 TOP2A 相同的机制和方式(染色体中前期活动)影响着癌症特异性基因的表达。
Obj ective]To screen the critical genes related to esophageal cancer by using chip data of the genes related to esophageal squamous cell cancer,and to investigate the function of the module of critical genes.[Methods]GSE1 7 3 5 1 data including 1 0 samples(5 normal samples and 5 esophageal squamous cell cancer samples)were down-loaded from gene expression GEO database.The R software package was used for data preprocessing and differential expression analysis.The differentially expressed genes were selected(FDR 2 or 0.9),and the degree of each point in network was calculat-ed,and the critical hub gene was selected.Then Cytoscape software plugin Mcode was used for network modulariza-tion.Bingo plugin(P<0.05)was used for the functional note of module of hub gene.The mechanism and mode in-fluencing the differentially expressed genes causing esophageal cancer was inferred.[Results]Totally 600 differentially expressed genes were screened by comparing the expressed data of normal su

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目的 分析致吉林省2009-2011年手足口病(hand,foot and mouth disease,HFMD)流行的柯萨奇病毒A组16型(Coxsackievirus group A type 16,CA16)分离株的基因亲缘关系.方法 对吉林省2009-2011年分离获得的54株CA16分离株的VP1编码区基因进行逆转录-聚合酶链反应扩增以及基因序列测定,使用MEGA 4.0软件进行基因亲缘关系分析.结果 吉林省2009-2011年54株CA16分离株有28株属于B1a基因亚型,26株属于B1b基因亚型;2009-2011年每年B1a基因亚型所占比例分别为86.7%、47.1%、31.8%,B1b基因亚型所占比例分别为13.3%、52.9%、68.2%.28株B1a基因亚型CA16形成了一个优势传播链和一个小传播链,26株B1b基因亚型CA16形成了一个优势传播链和两个小传播链.结论 B1a基因亚型所占比例呈现逐年下降趋势,B1b基因亚型所占比例呈现逐年增加趋势.吉林省2009-2011年呈现两个基因亚型各有一个优势传播链为主、各有1~2个小传播链为辅的共流行传播模式.
Objective To analyze the phylogenetic characteristics of Coxsackievirus group A type 16 (CA16) causing the epidemic of hand,foot and mouth disease(HFMD) in Jilin province from 2009 to 2011.Methods To choose 54 CA16 strains isolated from HFMD in Jilin province to do the reverse transcription-polymerase chain reaction (RT-PCR) and sequences of VP1 coding genes,and to analyze the sequence by the software of Mega4.0.Results 28 strains of 54 CA16 strains were B1a genotype and 26 strains of those were B1b genotype in Jilin province from 2009 to 2011 ; the proportion of B1a genotype was 86.7%,47.1% and 31.8% yearly,and the proportion of B1b genotype was 13.3%,52.9%,68.2% yearly from 2009 to 2011.28 strains of B1a genotype formed one dominant and one small transmission chain,26 strains of B1b genotype formed one dominant and two small transmission chains.Conclusion The proportion of B1a genotype showed increased year by year,and the proportion of B1b genotype showed decreased y

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目的探讨miR-19a对溃疡性结肠炎的作用机制。方法通过生物信息学分析预测miR-19a可能的靶基因,通过免疫组化及Western blotting技术检测靶基因在溃疡性结肠炎小鼠中表达的变化,并进一步通过绿色荧光蛋白报告载体实验对靶基因进行鉴定。结果生物信息学分析预测miR-19a可能的靶基因是TNF-α,免疫组化及Western blotting显示溃疡性结肠炎小鼠肠道组织TNF-α表达增加,miR-19a可抑制TNF-α-3''UTR-WT报告基因活性,而变异型TNF-α-3''UTR-mut报告基因活性不能被抑制。结论miR-19a的靶基因为TNF-α,其结合位点为TNF-α3''UTR,miR-19a可能在肠道通过直接调控TNF-α而发挥作用。
Objective To study the role of miR-19a in ulcerative colitis (UC) in mice. Methods The target gene of miR-19a was predicted by bioinformatics analysis. The expression of the target protein in UC colon was detected by immunohistochemistry and Western blotting. The target gene was further identified by enhanced green fluorescent protein (EGFP) report vector system. Results The target gene of miR-19a was TNF-αas predicted by bioinformatics analysis. TNF-αexpression was highly expressed in the colonic tissue of UC mice. MiR-19a could inhibit the report gene activity of TNF-α-3''UTR-WT but no that of TNF-α-3''UTR-Mut. Conclusion The target gene of miR-19a is TNF-α, and the binding site is TNF-α3''UTR. The possible role of miR-19a in UC pathogenesis involves regulation of TNF-αexpression in the colon.

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以真菌毒素与分子植物病理学实验室前期分离、鉴定并保存的玉米大斑病菌菌株F1-40(A交配型菌株)、01-23(a交配型菌株)为试验材料,利用候选基因法,通过PCR扩增和Genome Walking技术,对A交配型菌株和a交配型菌株的MAT基因进行同源片段扩增,从而获得基因全长及其侧翼序列,进一步利用生物信息学方法对扩增得到的MAT基因全长进行保守结构域分析,利用玉米大斑病菌基因组数据库的Blast序列比对软件将MAT1基因和MAT2基因的侧翼序列进行比对。研究结果表明,在不同交配型的玉米大斑病菌中,A交配型的菌株中含有A交配型基因MAT1,a交配型菌株中含有a交配型基因MAT2。2个基因均含有1个内含子,其中MAT1基因编码包括1个完整的MAT-α结合域,该结合域属于MAT alpha1家族。MAT2基因编码包含1个完整的HMG-box结合域,该结合域属于DNA结合蛋白中HMG-box家族的Ⅰ类成员,由3个螺旋结构组成,位于133-202个氨基酸残基之间,整体呈U型,结构比较松散,通过高度序列特异性与DNA的小沟结合,参与DNA的复制、转录、翻译等一系列的过程,从而参与玉米大斑病菌的有性生殖过程。MAT1基因和MAT2基因侧翼序列的相似性高于93%。
In this study,we used the strains F 1-40(Mating type A) and 01-23(Mating type a) as materials.In order to obtain the full-length and the flanking sequence of MAT genes,the MAT1 gene of mating type A strain and the MAT2 gene of mating type a strain of Setosphaeria turcica were cloned by PCR and genome walking with the can-didate gene strategy .The conserved domain database of the full-length genes were analyzed .The flanking sequence of MAT1 and MAT2 genes were comprised by the Blast of genomic database of S.tucrica.The results suggested that both genes contain one introns .MAT1 encodes amino acids contain a complete MAT αd-omain,the domain as part of the MAT alpha1 family.MAT2 gene encodes amino acids ,including a complete MATA HMG-box combining with do-main,the domain as part of the DNA binding protein in the HMG -boxⅠclass members of the family ,such member containing a single HMG box ,composed of three helix ,which located between the 133-202 residues in the form of high

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目的 对中国浙江南部地区人群花生四烯酸代谢脂氧合酶通路5-脂氧合酶激活蛋白基因(ALOX5AP基因)4个单核苷酸多态性(SNPs)和细胞色素P450酶(CYP450)通路4个SNPs的多态性进行研究,探讨基因多态性、基因-基因间联合交互作用与脑梗死的患病风险的相关性.方法 采用病例对照设计,测定了292例脑梗死患者和259例对照者8个基因位点,包括ALOX5AP基因的4个位点:SG13S32(rs9551963)、SG13S42(rs4769060)、SG13 S89(rs4769874)、SG13Sl14(rs10507391),及EPHX2基因G860A(rs751141)、CYP2C9*2基因A1075C (rs1057910)、CYP2C9*3基因C430T(rs1799853)和CYP3A5基因A6986G(rs776746)位点SNPs.应用广义多因子降维法(GMDR)软件检测基因基因之间的交互作用.结果 脑梗死组和对照组中8个候选基因位点的基因型分布在脑梗死组和对照组间比较差异无统计学意义.GMDR方法显示最优模型为SG13Sl14和A6986G两基因联合作用模型,其样本检验准确度56.32%,交叉检验一致性为10/10,符号检验P=0.011.调整年龄、高血压、糖尿病因素后SG13S114和A6986G交互变量与脑梗死患病风险正相关(OR=1.804,95%CI1.180~2.759,P=0.006).结论 SG13Sl14和A6986G基因联合交互作用显著增加脑梗死患病风险.对基因基因间的交互作用分析,有助于更深入地研究复杂疾病的基因型和表型间的关系.
Objective To investigate 4 variants single nucleotide polymorphisms (SNPs) of 5-lipoxygenase-activating protein(ALOX5AP) in lipoxygenase pathway and in cytochrome P450 pathway as susceptibility genes for stroke in a southeastern Chinese population,and evaluate the associations between susceptibility genes and cerebral infarction,to find whether gene-gene interactions increase the risk of cerebral infarction.Methods By case-control study,two hundred and ninety-two patients with cerebral infarction and 259 healthy control subjects were included.Eight variants in 5 candidate genes were examined for stroke risk,including the SG13S32 (rs9551963),SG13S42 (rs4769060),SG13S89 (rs4769874),and SG13Sl14 (rs10507391) variants of the ALOX5AP gene,the G860A (rs751141) variant of the soluble epoxide hydrolase (EPHX2) gene,the A1075C (rs1057910) variant of the CYP2C9 *2 gene,the C430T (rs1799853) variant of the CYP2C9* 3 gene,and the A6986G (rs776746) variant of the CYP3A5 gene.Gene-gene interactions
春小麦龙辐10号外源基因转化后代中发现了变异植株,并选育出弱冬习性的突变系T128。为了明确T128的突变机理,利用特异标记检测了龙辐10号和突变系T128的春化基因。结果表明:龙辐10号和T128的春化基因分别是Vrn-A1a、vrn-B1、vrn-D1、vrn-B3和vrn-A1、Vrn-B1、vrn-D1、vrn-B3。龙辐10号具有显性基因Vrn-A1a,而突变系T128的显性基因为Vrn-B1,致使突变系T128变为弱冬习性,生长发育时期延迟,表明外源基因转化过程可以导致基因变异。
Agronomic trait variation was found in the offsprings of genetic transformation in wheat Longfu 10 , and mutant line T128 with medium winterness was bred .In order to determine mutation mechanism ,vernaliza-tion genes of Longfu 10 and mutant line T128 were tested by designed mark .The result showed that vernaliza-tion genes type of Longfu10 were V rn-A1 a ,v rn-B1 ,v rn-D1 and v rn-B3 ,that of mutant line T128 were v rn-A 1 , V rn-B1 ,v rn-D1 and v rn-B3 .Longfu 10 had dominant gene V rn-A1a ,dominant gene of mutant line T128 was V rn-B1 .It induced medium winterness of mutant line T 128 ,delayed developmental stage .The research consid-ered that genetic transformation induces variation of non-target agronomic traits .

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将拟南芥茉莉素受体基因COI1在水稻中的同源基因OsCOI1a构建到植物双元表达载体pMYC2,导入拟南芥茉莉素受体突变体coi1-1中,采用Western blot检测OsCOI1 a基因的蛋白表达水平,通过观察突变体花粉的活性和果荚的育性,检测OsCOI1 a对coi1-1突变体的互补情况,研究OsCOI1 a基因的功能。结果表明,OsCOI1 a基因能够在拟南芥coi1-1突变体中正确表达,并能部分互补雄性不育的表型,表明OsCOI1 a基因在水稻茉莉素信号通路中可能起茉莉素受体作用。
We cloned OsCOI1a into the expression vector pMYC2,and transformed it into Arabidopsiscoi1-1 mutants. We tested the protein expression levels by western blot,observed the activity of pollen and the sterility of siliques in coi1-1 mutants transformed with OsCOI1 a,and found out that OsCOI1 a could partly complement the phenotype of the sterility of Arabidopsis coi1-1 mutants. All these results suggested that OsCOI1 a might be a receptor of jasmonates in rice.

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本研究利用PCR技术从马铃薯块茎基因组DNA中克隆块茎特异性启动子patatin,并从苏云金芽孢杆菌218中克隆aii A(高丝氨酸环内酯酶)基因,构建含aii A基因的抗软腐病植物表达载体p BI121-patatinaii A。并利用农杆菌介导法将aii A基因导入花魔芋,以研究aii A基因在魔芋块茎组织中的特异表达。结果表明,转化植株经GUS染色,仅在球茎部位出现蓝色斑点,经PCR检测,RT-PCR及Southern杂交检测证实aii A基因已整合到花魔芋基因组,初步表明aii A基因可在魔芋球茎内特异性表达。本研究对今后魔芋通过分子遗传工程改良软腐病抗性具有一定的应用价值。
In this study, a plant expression vector pBI121-patatin-aiiA was constructed by carrying a aiiA (acyl-homoserine lactonase) gene which was obtained from Bacillus thuringiensis and driven by a tuber-specific promoter of patatin gene cloned from Solanum tuberosum genomic DNA, and then transferred into Amorphophallus konjac mediated by Agrobacterium tumefaciens. PCR, RT-PCR and Southern blot analysis confirmed that aiiA gene was integrated into A . konjac genome. The results of GUS staining showed that the blue spots could be only observed on the corm of transformed A . konjac plants, which preliminarily indicated that aiiA gene could be specifically expressed in the corm of transformed A . konjac plants. This study provided a certain applicable value on resistance improvement of soft rot disease through molecular genetic engineering.

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